Cytoscape and Flamory

Flamory provides the following integration abilities:

Create and use window snapshots for Cytoscape
Take and edit Cytoscape screenshots
Automatically copy selected text from Cytoscape and save it to Flamory history

To automate your day-to-day Cytoscape tasks, use the Nekton automation platform. Describe your workflow in plain language, and get it automated using AI.

Screenshot editing

Flamory helps you capture and store screenshots from Cytoscape by pressing a single hotkey. It will be saved to a history, so you can continue doing your tasks without interruptions. Later, you can edit the screenshot: crop, resize, add labels and highlights. After that, you can paste the screenshot into any other document or e-mail message.

Here is how Cytoscape snapshot can look like. Get Flamory and try this on your computer.

Cytoscape - Flamory bookmarks and screenshots

Application info

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:

Load molecular and genetic interaction data sets in many formats

Project and integrate global datasets and functional annotations

Establish powerful visual mappings across these data

Perform advanced analysis and modeling using Cytoscape plugins

Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.

Integration level may vary depending on the application version and other factors. Make sure that user are using recent version of Cytoscape. Please contact us if you have different integration experience.